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YangLab@Northwestern

This repo stores the codes for Yang lab projects

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  1. OctopuSV OctopuSV Public

    Efficient merging of structural variants from multiple SV callers and samples

    Python 31 1

  2. ScanNeo ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 30 7

  3. pxblat pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 17

  4. ScanNeo2 ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 15 1

  5. EasyEvo2 EasyEvo2 Public

    To use Evo2 easily

    Python 13 1

  6. ScanITD ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    Python 12 3

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