First draft of cva16 dataset

.github/workflows/build-and-deploy.yml

@@ -2,10 +2,6 @@ name: build-and-deploy
 
 on:
   push:
-    branches:
-      - master
-      - staging
-      - release
   pull_request:
   repository_dispatch:
     types: build-and-deploy
@@ -30,13 +26,16 @@ jobs:
 
     runs-on: ubuntu-24.04
 
+    permissions:
+      contents: write
+
     environment:
       name: ${{ github.ref }}
 
     env:
       VERBOSE: 0
       PYTHONUNBUFFERED: 1
-      GH_TOKEN: ${{ github.token }}
+      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - name: config
@@ -48,6 +47,9 @@ jobs:
 
           echo 'is_release=${{ github.ref == 'refs/heads/release' }}' >> $GITHUB_OUTPUT
 
+          git config --global user.email "you@example.com"
+          git config --global user.name "Your Name"
+
       - name: "DEBUG"
         run: |
           set +x
@@ -115,40 +117,13 @@ jobs:
       - name: "Rebuild, commit and push datasets (non-release branch)"
         if: ${{ steps.config.outputs.is_fork != 'true' && steps.config.outputs.is_release != 'true' }}
         run: |
-          git config --global user.email "${{ secrets.BOT_GIT_USER_EMAIL }}"
-          git config --global user.name "${{ secrets.BOT_GIT_USER_NAME }}"
-
           ./scripts/rebuild --input-dir 'data/' --output-dir 'data_output/' --push --repo="${GITHUB_REPOSITORY}"
 
       - name: "Rebuild, commit, push and make a release (release branch)"
         if: ${{ steps.config.outputs.is_fork != 'true' && steps.config.outputs.is_release == 'true' }}
         run: |
-          git config --global user.email "${{ secrets.BOT_GIT_USER_EMAIL }}"
-          git config --global user.name "${{ secrets.BOT_GIT_USER_NAME }}"
-
           ./scripts/rebuild --input-dir 'data/' --output-dir 'data_output/' --release --repo="${GITHUB_REPOSITORY}"
 
-      - name: "Install awscli"
-        if: ${{ steps.config.outputs.is_fork != 'true' && steps.config.outputs.should_deploy == 'true' }}
-        run: |
-          pushd /tmp >/dev/null
-            curl -fsSL "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip"
-            unzip -oqq awscliv2.zip
-            sudo ./aws/install --update
-          popd >/dev/null
-          aws --version
-
-      - name: "Deploy dataset server"
-        if: ${{ steps.config.outputs.is_fork != 'true' && steps.config.outputs.should_deploy == 'true' }}
-        env:
-          DATA_AWS_S3_BUCKET: ${{ secrets.DATA_AWS_S3_BUCKET }}
-          DATA_AWS_CLOUDFRONT_DISTRIBUTION_ID: ${{ secrets.DATA_AWS_CLOUDFRONT_DISTRIBUTION_ID }}
-          AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
-          AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
-          AWS_DEFAULT_REGION: us-east-2
-        run: |
-          ./scripts/upload 'data_output/'
-
       - name: "Upload build artifacts: dataset server"
         uses: actions/upload-artifact@v4
         with:

data/community/collection.json

@@ -29,6 +29,10 @@
     "community/v-gen-lab/dengue/denv2",
     "community/v-gen-lab/dengue/denv3",
     "community/v-gen-lab/dengue/denv4",
-    "community/genspectrum/marburg/HK1980/all-lineages"
+    "community/genspectrum/marburg/HK1980/all-lineages",
+    "community/hodcroftlab/enterovirus/cva16",
+    "community/hodcroftlab/enterovirus/cva10",
+    "community/hodcroftlab/enterovirus/evd68",
+    "community/hodcroftlab/enterovirus/eva71"
   ]
 }

data/community/hodcroftlab/enterovirus/cva10/CHANGELOG.md

@@ -0,0 +1,3 @@
+## Unreleased
+
+Initial release

data/community/hodcroftlab/enterovirus/cva10/README.md

@@ -0,0 +1,3 @@
+# Example dataset for CV-A10
+
+To be continued ...

data/community/hodcroftlab/enterovirus/cva10/genome_annotation.gff3

@@ -0,0 +1,20 @@
+##gff-version 3
+#!gff-spec-version 1.21
+#!processor NCBI annotwriter
+##sequence-region AY421767.1 1 7409
+##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=42769
+AY421767.1	Genbank	region	1	7409	.	+	.	ID=AY421767.1:1..7409;Dbxref=taxon:42769;gb-acronym=CV-A10;gbkey=Src;isolate=CA10;mol_type=genomic RNA;strain=Kowalik
+AY421767.1	Genbank	five_prime_UTR	1	744	.	+	.	ID=id-AY421767.1:1..744;gbkey=5'UTR
+AY421767.1	Genbank	region	745	7326	.	+	.	ID=cds-AAR38847.1;Dbxref=NCBI_GP:AAR38847.1;Name=AAR38847.1;gbkey=CDS;product=polyprotein;protein_id=AAR38847.1
+AY421767.1	Genbank	CDS	745	951	.	+	0	ID=id-AAR38847.1:1..69;Parent=cds-AAR38847.1;gbkey=Prot;product=VP4
+AY421767.1	Genbank	CDS	952	1716	.	+	0	ID=id-AAR38847.1:70..324;Parent=cds-AAR38847.1;gbkey=Prot;product=VP2
+AY421767.1	Genbank	CDS	1717	2436	.	+	0	ID=id-AAR38847.1:325..564;Parent=cds-AAR38847.1;gbkey=Prot;product=VP3
+AY421767.1	Genbank	CDS	2437	3330	.	+	0	ID=id-AAR38847.1:565..862;Parent=cds-AAR38847.1;gbkey=Prot;product=VP1
+AY421767.1	Genbank	CDS	3331	3780	.	+	0	ID=id-AAR38847.1:863..1012;Parent=cds-AAR38847.1;gbkey=Prot;product=2A
+AY421767.1	Genbank	CDS	3781	4077	.	+	0	ID=id-AAR38847.1:1013..1111;Parent=cds-AAR38847.1;gbkey=Prot;product=2B
+AY421767.1	Genbank	CDS	4078	5064	.	+	0	ID=id-AAR38847.1:1112..1440;Parent=cds-AAR38847.1;gbkey=Prot;product=2C
+AY421767.1	Genbank	CDS	5065	5322	.	+	0	ID=id-AAR38847.1:1441..1526;Parent=cds-AAR38847.1;gbkey=Prot;product=3A
+AY421767.1	Genbank	CDS	5323	5388	.	+	0	ID=id-AAR38847.1:1527..1548;Parent=cds-AAR38847.1;gbkey=Prot;product=3B
+AY421767.1	Genbank	CDS	5389	5937	.	+	0	ID=id-AAR38847.1:1549..1731;Parent=cds-AAR38847.1;gbkey=Prot;product=3C
+AY421767.1	Genbank	CDS	5938	7323	.	+	0	ID=id-AAR38847.1:1732..2193;Parent=cds-AAR38847.1;gbkey=Prot;product=3D
+AY421767.1	Genbank	three_prime_UTR	7327	7409	.	+	.	ID=id-AY421767.1:7327..7409;gbkey=3'UTR

data/community/hodcroftlab/enterovirus/cva10/pathogen.json

@@ -0,0 +1,61 @@
+{
+  "schemaVersion": "3.0.0",
+  "files": {
+    "reference": "reference.fasta",
+    "pathogenJson": "pathogen.json",
+    "genomeAnnotation": "genome_annotation.gff3",
+    "treeJson": "tree.json",
+    "examples": "sequences.fasta",
+    "readme": "README.md",
+    "changelog": "CHANGELOG.md"
+  },
+  "attributes": {
+    "name": "Coxsackievirus A10",
+    "reference name": "Human coxsackievirus A10 strain Kowalik, complete genome",
+    "reference accession": "AY421767.1"
+  },
+  "alignmentParams": {
+        "penaltyGapOpen": 13,
+        "penaltyGapOpenInFrame": 18,
+        "penaltyGapOpenOutOfFrame": 23,
+        "kmerLength": 6,
+        "kmerDistance": 25,
+        "minMatchLength": 30,
+        "allowedMismatches": 15,
+        "minLength": 30
+    },
+  "defaultCds": "VP1",
+  "compatibility": {
+        "cli": "3.0.0-alpha.0",
+        "web": "3.0.0-alpha.0"
+    },
+  "qc": {
+    "frameShifts": {
+      "enabled": true,
+      "scoreWeight": 20
+    },
+    "missingData": {
+      "enabled": true,
+      "missingDataThreshold": 2000,
+      "scoreBias": 500
+    },
+    "mixedSites": {
+      "enabled": true,
+      "mixedSitesThreshold": 40
+    },
+    "privateMutations": {
+      "cutoff": 300,
+      "enabled": true,
+      "typical": 250,
+      "weightLabeledSubstitutions": 1,
+      "weightReversionSubstitutions": 2,
+      "weightUnlabeledSubstitutions": 1
+    },
+    "stopCodons": {
+      "enabled": true,
+      "scoreWeight": 40
+    }
+    },
+  "cdsOrderPreference":["VP4", "VP2", "VP3", "VP1", "2A", "2B", "2C", "3A", "3B", "3C", "3D"]
+
+}

data/community/hodcroftlab/enterovirus/cva10/reference.fasta

@@ -0,0 +1,108 @@
+>AY421767.1 Human coxsackievirus A10 strain Kowalik, complete genome
+TTAAAACAGCCTGTGGGTTGCACCCACTCACAGGGCCCACTGGGCGCTAGCACTCTGGTACCGTGGTACC
+TTTGTGCGCCTGTTTTATACCCCCTTCCCCGTTTGAACATTAGAAGTAACGCACCTCGATCAGTAGCAGG
+CGCGGCGCACCAGCCGTGTCTTGATCAAGCACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCAC
+GCGGTTGAAGGAGAAAACGTTCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAGCACCATGGAAGTTG
+CAGAGTGTTTCGCTCAGCACTCCCCCCCCAGTGTAGATCAGGCTGATGGATCACCGCGTTCCTCACGGGT
+GACCGTGGCGGTGGTCGCGTTGGCGGCCTGCCCATGGGGCAACCCATGGGACGCTCTAATATGGACATGG
+TGTGAAGAGTCTATTGAGCTAGTTAGTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCA
+CGTGTCCCCAACCCAGGGGATAGCGTGTCGTAACGGGTAACTCTGCAGCGGAACCGACTACTTTGGGTGT
+CCGTGTTTCCTTTATTCTTATCCTGGCTGCTTATGGTGACAATTGAGAGATTGTTACCATATAGCTATTG
+GATTGGCCATCCGGTGTCTAACAGAGCTATAATATATCTTTTTGTTGGGTTCGTACCCCTCAATTTTGAG
+GTTGTTCTCACATTAAAGTACATCTTGGTGTTAAATATCAGAAGATGGGAGCACAAGTTTCATCTCAGAG
+GTCAGGATCCCACGAGACTGGGAATGTGGCTACTGGAGGATCGACCATCAACTTCACCAATATAAATTAT
+TACAAGGATTCATATGCAGCTTCTGCTAGTCGTCAGGACTTCACACAAGATCCAAAGAAGTTCACTCAAC
+CGGTTTTGGATTCCATCAGAGAGCTGTCTGCCCCCTTGAATTCACCATCAGTTGAAGCGTGTGGATATAG
+TGACCGAGTGGCACAACTAACGGTGGGTAACTCCTCCATTACGACACAAGAGGCTGCCAATATAGTTTTG
+GCATACGGTGAGTGGCCTGAGTACTGCCCTGATACTGACGCAACAGCGGTGGACAAGCCTACTCGTCCGG
+ATGTGTCAGTTAATAGATTCTACACTTTAGATTCAAAGATGTGGCAAGAGAACTCTACTGGATGGTATTG
+GAAGTTCCCAGATGTTTTGAACAAGACCGGGGTGTTTGGTCAGAATGCACAGTTCCACTACTTGTATCGT
+TCAGGGTTCTGTCTTCATGTTCAATGTAACGCTAGCAAATTTCACCAGGGGGCTCTTCTTGTGGCAGTTA
+TCCCGGAGTTCGTTCTAGCAGGCAGAGGTTCAAACACGAAGCCCAATGAAGCCCCTCACCCGGGATTTAA
+TACCACCTTTCCTGGCACTGCTGGCGCTTCCTTCAACGACCCGTACGTGCTTGACTCTGGGGTACCTCTT
+AGCCAATCCTTAATATACCCACATCAGTGGATCAACTTAAGGACCAACAATTGTGCAACAATAATAGTAC
+CTTATATCAATGCTGTCCCCTTTGATTCAGCCATCAATCATAGCAACTTTGGATTAATAGTTGTGCCTGT
+GAGTCCGCTGAAATACTCTTCAGGGGCCACCACTGCAATCCCAATCACAGTGACCATAGCGCCCCTCAAT
+TCCGAATTTGGTGGGCTGCGCCAAGCTGTCAGCCAGGGACTCCCTACCGAGTTAAGACCAGGCACCAATC
+AGTTCCTAACAACGGAAGATGATACTGCCGCACCCATACTCCCAGGTTTCTCCCCCACCCCAAGCATCCA
+CATTCCAGGAGAAGTACGCTCATTACTAGAACTGTGTAGGGTGGAAACCATACTGGAAGTGAACAACACG
+ACCGATGCAACCGGTCTGAACAGACTCCTAATTCCAGTCTCCGCCCAAAACAAGGCAGATGAACTATGTG
+CTGCATTCATGGTTGATCCTGGTCGTATCGGGCCCTGGCAATCGACTTTGGTTGGTCAAATATGTAGGTA
+CTACACACAATGGTCAGGCTCGTTAAAGGTCACATTCATGTTTACAGGCTCTTTTATGGCAACAGGTAAG
+ATGCTGATAGCGTACTCACCACCAGGCAGTGCTCAACCAGCCAATAGGGAGACCGCAATGCTCGGGACCC
+ACGTCATATGGGATTTTGGATTACAATCTTCAGTTTCACTGGTGATACCATGGATCAGCAACACACACTT
+CAGAACAGCCAAAACTGGTGGTAACTATGACTATTACACAGCTGGTGTGGTGACATTATGGTATCAAACA
+AATTATGTAGTCCCGCCTGAGACGCCCGGAGAGGCTTACATTATCGCCATGGGGGCTGCTCAAGACAACT
+TCACCTTGAAGATATGTAAAGACACGGATGAGGTTACCCAACAAGCTGTCTTACAAGGCGACCCCGTGGA
+GGACATCATCCACGACGCTTTGAGCAGCACTGTGCGGCGGGCCATAACTAGTGGTCAAGATGTCAACACA
+GCGGCCGGTACCGCTCCTAGCTCTCACAGGTTGGAGACTGGTCGTGTTCCCGCCCTACAAGCAGCAGAAA
+CTGGAGCCACTTCTAACGCTACAGATGAGAACATGATAGAAACGCGGTGTGTCATGAACAGAAATGGAGT
+GTTGGAGGCGACTATAAGTCATTTCTTCTCACGCTCAGGTTTGGTGGGTGTTGTCAATCTAACTGACGGA
+GGCACCGATACAACGGGATATGCAGTGTGGGACATTGACATCATGGGTTTTGTGCAACTGCGGCGGAAAT
+GTGAGATGTTCACATACATGAGATTCAACGCTGAGTTCACATTCGTCACTACAACAGAAAATGGCGAGGC
+AAGGCCATTTATGTTACAGTATATGTATGTACCTCCAGGTGCCCCTAAGCCAACGGGTAGAGATGCTTTT
+CAGTGGCAAACAGCGACAAATCCATCCGTTTTCGTTAAGCTCACAGATCCACCTGCTCAGGTATCAGTCC
+CCTTCATGTCACCTGCTAGTGCCTACCAATGGTTCTATGACGGGTATCCAACATTTGGACAACACCCGGA
+AACATCTAATACAACATATGGACAGTGCCCTAACAACATGATGGGGACCTTTGCTGTGAGAGTAGTGAGT
+AGAGTGGCTAGCCAGCTCAAACTACAGACACGAGTGTATATGAAGCTTAAGCATGTGAGAGCATGGATCC
+CTAGGCCAATAAGATCCCAGCCTTACCTCCTAAAGAATTTTCCAAATTATGATAGTAGTAAGATCACATA
+CAGCGCAAGAGATCGTGCCAGCATAAAACAAGCTAATATGGGAAAGTTTGGGCAACAGTCTGGGGCAATA
+TATGTGGGTAATTACAGAGTGGTGAATAGACACTTGGCCACACATAACGATTGGGTAAATCTGGTGTGGG
+AGGATAGTTCTAGAGACTTGCTGGTCTCATCTACTACAGCACAGGGGTGTGATACCATAGCTCGGTGCAA
+CTGTCAGACAGGTGTGTATTACTGTAACTCTCGTAGGAAACACTACCCGGTCAGCTTTTCCAAACCCAGC
+CTGATATTTGTTGAAGCTAGCGAATATTACCCAGCTAGGTACCAGTCACACCTCATGCTTGCCGAGGGTC
+ACTCAGAACCTGGTGACTGTGGTGGCATCCTCAGGTGTCAACACGGTGTGGTTGGGTTAGTTTCCACCGG
+TGGAAATGGCCTCGTGGGGTTTGCTGATGTGAGGGACTTACTCTGGCTTGATGAGGAGGCTATGGAACAA
+GGAGTGTCTGACTACATCAAAGGTCTTGGTGATGCTTTTGGCACGGGCTTCACTGACGCAGTGTCCAGGG
+AAGTGGAAGCATTGAAAAATCACTTGATTGGCTCTGAGGGGGCTGTCGAGAAAATCTTGAAAAACCTGGT
+GAAGCTAATTTCAGCATTAGTTATAGTCATCAGGAGTGACTACGATATGGTCACTCTTACAGCTACGCTT
+GCCCTGATCGGGTGCCATGGGAGTCCTTGGGCGTGGATCAAATCAAAGACAGCTTCCATCTTAGGCATAT
+CCATGGCACAAAAGCAAAGCGCCTCATGGCTGAAGAAGTTCAATGATATGGCAAATGCCGCAAAAGGGCT
+CGAGTGGATCTCCAATAAGATCAGCAAGTTTATTGATTGGCTTAAGGAGAAGATCATTCCAGCTGCTAAG
+GAGAAAGTCGAGTTCTTGAATAACTTAAAGCAACTCCCTCTGTTGGAAAATCAAATTTCCAATCTCGAGC
+AATCTGCCGCCTCACAGGAAGATCTAGAAGCTATATTTGGCAATGTGTCGTACCTAGCTCATTTTTGCCG
+CAAGTTCCAACCACTCTACGCAACTGAGGCCAAGAGAGTCTATGCCCTGGAGAAAAGAGTGAACAACTAC
+ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCTTGATCATTAGAGGCTCTCCAGGTACGGGAA
+AATCACTTGCCACAGGTATTATAGCTAGAGCCATTGCTGATAAGTACCATTCCAGTGTCTATTCGCTCCC
+TCCAGACCCAGATCACTTCGACGGGTATAAACAACAGGTGGTCACAGTCATGGACGATCTCTGCCAGAAT
+CCAGACGGGAAAGATATGTCCTTGTTCTGCCAAATGGTCTCCACAGTGGACTTTATACCACCCATGGCGT
+CACTGGAAGAAAAAGGCGTATCCTTCACCTCTAAGTTTGTCATTGCATCGACCAACGCTAGCAACATCAT
+AGTCCCCACAGTCTCAGACTCAGATGCAATCCGCAGGAGATTCTATATGGACTGTGATATAGAAGTAACT
+GACTCTTACAAGACAGATCTCGGTCGATTGGACGCGGGTAGAGCTGCCAAGCTTTGTTCAGAGAATAACA
+CTGCTAACTTCAAAAGATGCAGTCCACTTGTGTGTGGCAAAGCCATCCAATTGAAAGATAGGAAGTCTAA
+GGTCAGATATAGTGTTGACACTATGGTATCAGAGCTAATCAGAGAGTACAACAATAGATCTGCTGTTGGA
+AACACCATAGAAGCACTCTTCCAAGGGCCCCCCAAGTTCAGACCTATAAGAATCAGCCTCGAGGAGAAGC
+CAACACCAGATGCTATCAGTGACCTTCTCGCTAGTGTTGATAGCGAAGAGGTCCGACAGTATTGCAGAGA
+GCAAGGGTGGATAATCCCAGAAACACCAACCAACGTGGAACGACACCTCAATAGAGCAGTTCTGGTAATG
+CAGTCCATTGCTACCGTAGTTGCGGTTGTGTCCCTTGTGTATGTCATTTATAAACTGTTTGCCGGATTTC
+AAGGTGCCTACTCTGGAGCACCCAAGCAGGCGCTCAAGAAGCCTGTGCTAAGAACAGCTACTGTCCAAGG
+ACCTAGCTTGGACTTCGCTTTGTCTCTTCTGAGGCGCAACATCAGACAAGCGCAGACCGACCAGGGACAC
+TTCACCATGCTAGGCATACGGGACCGTCTAGCCATCTTGCCACGCCACTCACAACCAGGGAAGACCATCT
+GGATAGAGCACAAATTGGTCAACGTACTAGATGCAGTTGAGTTGGTGGATGAGCAAGGTGTTAATTTGGA
+ACTCACGCTGGTGACCTTGGACACTAATGAGAAGTTTAGGGACATTACCAAGTTCATCCCAGAGACAATA
+GCTGGTGCTAGTGATGCAACTCTAGTTATCAACACTGAGCATATGCCCTCGATGTTTGTGCCAATAGGTG
+ACGTTGTGCAGTATGGGTTTTTGAATCTCAGTGGCAAACCCACACACAGAACTATGATGTACAATTTCCC
+CACGAAAGCAGGACAGTGTGGGGGGGTAGTCACTTCAGTTGGCAAGATCATTGGAATCCACATTGGCGGG
+AATGGACGCCAGGGCTTCTGCGCTGGTTTAAAGAGGAGCTACTTTGCCAGCGAGCAAGGAGAGATCCAGT
+GGATGAAGCCCAACAAAGAGACTGGGAGGCTGAACATCAATGGTCCAACCCGAACCAAACTGGAACCTAG
+CGTGTTCCACAATGTGTTCGAGGGTAATAAAGAGCCAGCAGTTCTGACCAGTAAAGACCCCAGGCTTGAG
+GTTGATTTTGAACAAGCCTTGTTCTCCAAATATGTGGGCAACACTCTGCATGAGCCTGATGAGTATGTGA
+CACAAGCTGCCCTTCATTACGCAAATCAATTAAAACAACTAGACATAAACACCAGCAAGATGAGCATGGA
+GGAGGCGTGCTATGGTACAGAAAATTTAGAAGCTATAGACCTACACACCAGTGCTGGATATCCTTATAGT
+GCCTTGGGTATTAAAAAGAGGGATATTCTTGATCCGGTCACCAGGGACACCTCCAAGATGAAACTATACA
+TGGACAAGTATGGACTAGATTTACCCTATTCAACCTATGTGAAGGATGAGCTTAGGTCTCTAGATAAAAT
+CAAGAAGGGGAAATCTCGCTTAATTGAGGCCAGCAGCTTGAATGATTCTGTCTACCTTAGAATGACTTTT
+GGTCATCTTTATGAGGTGTTTCACGCCAACCCGGGAACTATAACCGGGTCTGCAGTGGGGTGTAATCCTG
+ATGTGTTCTGGAGCAAGTTGCCAATTCTACTACCGGGTTCGCTCTTTGCGTTTGACTACTCAAGCTATGA
+TGCAAGTCTTAGTCCTGTATGGTTCAGAGCTTTAGAATTGGTTTTACGAGAGATTGGTTACTCAGAGGAG
+GCTGTGTCACTCATAGAGGGGATTAACCACACTCACCATGTGTATCGGAATAAGACATACTGTGTCCTTG
+GTGGGATGCCTTCAGGTTGCTCTGGCACTTCCATTTTCAATTCCATGATTAACAACATAATCATTAGAAC
+TCTCTTGATCAAGACGTTCAAAGGGATAGACTTGGATGAACTAAACATGGTGGCCTACGGAGATGATGTA
+CTGGCTAGCTACCCATTTCCCATCGACTGTTTGGAGTTGGCGAGAACTGGCAAAGAGTATGGACTGACTA
+TGACTCCCGCCGATAAGTCACCCTGTTTTAATGAAGTCACCTGGGAGAACGCAACCTTTTTGAAGAGGGG
+TTTCCTACCAGACCATCAGTTCCCTTTTCTAATCCACCCTACCATGCCCATGAGGGAAATCCACGAGTCC
+ATTCGTTGGACCAAGGATGCACGTAACACTCAAGACCACGTGCGTTCCCTTTGCTTGTTGGCGTGGCACA
+ATGGAAAGGAGGAATATGAAAAATTTGTGAGCACAATCAGATCAGTTCCTATTGGAAAAGCCTTGGCGAT
+ACCAAATTTTGAGAACTTGAGGAGAAATTGGCTCGAATTGTTTTAAACTTACAGCTTAAAGCTGAACCCC
+ACCAGAAACCTGGTCGTGCAAATGACTGGTGGGGGTAAATTTGTTATAACCAGAATAGC
+