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Fix affected_start/end with a MNP#306

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nh13 wants to merge 1 commit intojamescasbon:masterfrom
nh13:nh_affected_start_and_end
Open

Fix affected_start/end with a MNP#306
nh13 wants to merge 1 commit intojamescasbon:masterfrom
nh13:nh_affected_start_and_end

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@nh13 nh13 commented Oct 8, 2018

pyvcf does not like MNPs where the REF and ALT alleles share common bases (ex. REF=AAA and ALT=AAT).

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