V0.11.0rc#418

Merged

daler merged 25 commits intomasterfrom

Jan 2, 2025

Commits on Dec 20, 2024

added most typing annotations to bedtools.py file

duartemolha
authored and
daler
committed
better typing annotations

duartemolha
authored and
daler
committed
reverse some optimizations that caused bugs

duartemolha
authored and
daler
committed
recreated the symlink on doc/source/example_3

duartemolha
authored and
daler
committed
reverted the files mask to 755 modified in some files

duartemolha
authored and
daler
committed
reverted the files mask to 755 modified in some additional files

duartemolha
authored and
daler
committed
revert back to the same pybedtools.contrib.plotting.Track.rst

duartemolha
authored and
daler
committed
minor whitespace cleanup
daler
committed
re-enable passing kwargs to DataFrame.to_csv()
daler
committed
actually pass along is_sorted
daler
committed
rm no-longer-used cmdline -f arg
daler
committed
remove various unused variables
daler
committed
use non-deprecated pysam method
daler
committed
pin conda test env version of cython to same in pyproject
daler
committed

Commits on Dec 25, 2024

Commits on Dec 29, 2024

Commits on Jan 1, 2025

make test temporary directories not in the "test" folder

mr-c
authored and
daler
committed

Commits on Jan 2, 2025