A new framework for assessing the extinction risk of plant metapopulations in urban tree bases

This repository hosts the various codes used in the paper of the same name. It is structured as follows:

• The src folder contains the main code to manipulate and estimate the model proposed in the paper.

• The code_application_dataset_urban_tree_bases contains scripts to run the main code on the Paris 12 data set.

• The code_figures folder contains code to reproduce the figures for experiments on the Paris 12 data set.

• The code_statistical_tests_biological_traits contains the test procedures for the association between the plant species extinction risk and biological traits of the species.

• The code_synthetic_data contains various scripts to generate synthetic data and reproduce the experiments in the paper.

Additionally:

• The file run_estimation.py provides a minimal script running on the synthetic data set data.csv. It can be used as a starting point to run the code on new data sets.

• The Jupyter notebook Demo.ipynb provides a more detailed walkthrough of the main functions of the code.