snakemake pipeline#34

Merged

jeremyestein merged 17 commits intodevfrom

jeremy/pipeline

Jan 27, 2026

Commits on Dec 23, 2025

WIP - Make snakemake work
jeremyestein
committed

Commits on Jan 8, 2026

More pipeline glue. Pseudonymise to correctly named files. Improvements to logging.
jeremyestein
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Merge branch 'dev' into jeremy/pipeline
jeremyestein
committed

Commits on Jan 21, 2026

Create log dir before using it
jeremyestein
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Commits on Jan 27, 2026

Note that Windows may differ
jeremyestein
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