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Could not start qsiprep 1.1.1, <code>ValueError: Protocol not known: 'bids'</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1025 In PennLINC/qsiprep;

· arovai opened on Feb 6, 2026

[DOC] Add --output-resolution in command examples

Status: Open.

#1024 In PennLINC/qsiprep;

· arovai opened on Feb 6, 2026

Lesion mask not reoriented to LPS

bugSomething isn't workingSomething isn't working

Status: Open.

#1023 In PennLINC/qsiprep;

· rbakker opened on Jan 30, 2026

Missing xxhash module to run synthseg and synthstrip

bugSomething isn't workingSomething isn't working

Status: Open.

#1022 In PennLINC/qsiprep;

· lucile-hashimoto opened on Jan 23, 2026

HTML report - enhanced view of the DWI to T1w coregistration

enhancementNew feature or requestNew feature or request

Status: Open.

#1018 In PennLINC/qsiprep;

· samuelholly opened on Jan 13, 2026

B0 Field Mapping in HTML Report

bugSomething isn't workingSomething isn't working

Status: Open.

#1015 In PennLINC/qsiprep;

· sofiechung opened on Dec 10, 2025

Update boilerplate

Status: Open.

#1010 In PennLINC/qsiprep;

· araikes opened on Dec 2, 2025

Philips uses magnitude-zero b-vectors for b=0s

bugSomething isn't workingSomething isn't working

Status: Open.

#1005 In PennLINC/qsiprep;

· tsalo opened on Nov 21, 2025

bval and bvec file identification does not account for inheritance principle

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#990 In PennLINC/qsiprep;

· tsalo opened on Oct 28, 2025

Incorrect attempt to gather_inputs for TOPUP when only GRE Fieldmaps in /fmap

Status: Open.

#989 In PennLINC/qsiprep;

· ebloch1202yv opened on Oct 28, 2025

Problems with 3dcalc and 3dresample?

bugSomething isn't workingSomething isn't working

Status: Open.

#988 In PennLINC/qsiprep;

· JohannesWiesner opened on Oct 22, 2025

FSL version not reported in CITATION.html

bugSomething isn't workingSomething isn't working

Status: Open.

#981 In PennLINC/qsiprep;

· joellebagautdinova opened on Oct 8, 2025