Skip to content
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
16 changes: 11 additions & 5 deletions doc/v2/documentation_data_format.rst
Original file line number Diff line number Diff line change
Expand Up @@ -748,7 +748,7 @@ Noise distributions

Denote by :math:`m` the measured value,
:math:`y:=\text{observableFormula}` the simulated value
(the location parameter of the noise distribution),
(the median of the noise distribution),
and :math:`\sigma` the scale parameter of the noise distribution
as given via the ``noiseFormula`` field (the standard deviation of a normal,
or the scale parameter of a Laplace model).
Expand All @@ -761,25 +761,31 @@ Then we have the following effective noise distributions:
* - Type
- ``noiseDistribution``
- Probability density function (PDF)
* - Gaussian distribution
* - | Gaussian distribution
| (i.e., :math:`m` is normally distributed as :math:`m \sim \mathcal{N}(y, \sigma)`)
- ``normal``
- .. math::
\pi(m|y,\sigma) = \frac{1}{\sqrt{2\pi}\sigma}\exp\left(-\frac{(m-y)^2}{2\sigma^2}\right)
* - | Log-normal distribution
| (i.e., :math:`\log(m)` is normally distributed)
| (i.e., :math:`\log(m)` is normally distributed as :math:`\log(m) \sim \mathcal{N}(\log(y), \sigma)`)
- ``log-normal``
- .. math::
\pi(m|y,\sigma) = \frac{1}{\sqrt{2\pi}\sigma m}\exp\left(-\frac{(\log m - \log y)^2}{2\sigma^2}\right)
* - Laplace distribution
- ``laplace``
- | ``laplace``
| (i.e., :math:`m` is Laplace distributed as :math:`m \sim \mathcal{L}(y, \sigma)`)
- .. math::
\pi(m|y,\sigma) = \frac{1}{2\sigma}\exp\left(-\frac{|m-y|}{\sigma}\right)
* - | Log-Laplace distribution
| (i.e., :math:`\log(m)` is Laplace distributed)
| (i.e., :math:`\log(m)` is Laplace distributed as :math:`\log(m) \sim \mathcal{L}(\log(y), \sigma)`)
- ``log-laplace``
- .. math::
\pi(m|y,\sigma) = \frac{1}{2\sigma m}\exp\left(-\frac{|\log m - \log y|}{\sigma}\right)

Note that, for all continuous distributions, the simulated value is modeled
as the median of the noise distribution; i.e., measurements are assumed to
be equally likely to lie above or below the model output.

The distributions above are for a single data point.
For a collection :math:`D=\{m_i\}_i` of data points and corresponding
simulations :math:`Y=\{y_i\}_i`
Expand Down