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v2: Update tutorial #652

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3 changes: 2 additions & 1 deletion doc/index.rst
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Expand Up @@ -6,7 +6,7 @@
:caption: PEtab v1

PEtab v1 specs <v1/documentation_data_format.rst>
v1/tutorial/tutorial
Tutorial <v1/tutorial/tutorial>
v1/software_support


Expand All @@ -15,6 +15,7 @@
:caption: PEtab v2

PEtab v2 draft <v2/documentation_data_format.rst>
Tutorial <v2/tutorial/tutorial>

.. toctree::
:maxdepth: 2
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6 changes: 3 additions & 3 deletions doc/v1/tutorial/tutorial.rst
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@@ -1,6 +1,6 @@
==============
PEtab tutorial
==============
==================
PEtab 1.0 tutorial
==================

.. _Boehm et al. (2014): https://dx.doi.org/10.1021/pr5006923

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15 changes: 15 additions & 0 deletions doc/v2/tutorial/Boehm_JProteomeRes2014.yaml
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format_version: 2.0.0
model_files:
model:
location: model_Boehm_JProteomeRes2014.xml
language: sbml
parameter_files:
- parameters.tsv
experiment_files:
- experiments.tsv
condition_files:
- experimental_conditions.tsv
observable_files:
- observables.tsv
measurement_files:
- measurement_data.tsv
2 changes: 2 additions & 0 deletions doc/v2/tutorial/experimental_conditions.tsv
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conditionId targetId targetValue
epo_bolus Epo_concentration 1.25E-07
2 changes: 2 additions & 0 deletions doc/v2/tutorial/experiments.tsv
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experimentId time conditionId
epo_stimulation 0.0 epo_bolus
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49 changes: 49 additions & 0 deletions doc/v2/tutorial/measurement_data.tsv
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observableId experimentId measurement time noiseParameters
pSTAT5A_rel epo_stimulation 7.901072999 0 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 66.36349397 2.5 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 81.17132392 5 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 94.73030806 10 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 95.11648305 15 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 91.44171655 20 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 91.25709923 30 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 93.67229784 40 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 88.75423282 50 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 85.26970322 60 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 81.13239534 80 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 76.13592848 100 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 65.24805913 120 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 42.59965871 160 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 25.15779754 200 sd_pSTAT5A_rel
pSTAT5A_rel epo_stimulation 15.4301824 240 sd_pSTAT5A_rel
pSTAT5B_rel epo_stimulation 4.596533343 0 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 29.63454599 2.5 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 46.04380647 5 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 81.97473362 10 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 80.5716093 15 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 79.03571964 20 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 75.67238037 30 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 71.62471986 40 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 69.06286328 50 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 67.14738432 60 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 60.89947629 80 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 54.80925777 100 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 43.98128998 120 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 29.77145816 160 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 20.08901656 200 sd_pSTAT5B_rel
pSTAT5B_rel epo_stimulation 10.96184517 240 sd_pSTAT5B_rel
rSTAT5A_rel epo_stimulation 14.72316822 0 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 33.76234229 2.5 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 36.79985129 5 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 49.71760229 10 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 46.9281201 15 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 47.83657456 20 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 46.92872725 30 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 40.59775294 40 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 43.78366389 50 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 44.45738765 60 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 41.32715926 80 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 41.06273321 100 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 39.23583003 120 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 36.61946054 160 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 34.8937144 200 sd_rSTAT5A_rel
rSTAT5A_rel epo_stimulation 32.21107716 240 sd_rSTAT5A_rel
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