Update Phase I learning code to latest master #54
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dzenanz wants to merge 19 commits intoOpenImaging:masterfrom
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Update Phase I learning code to latest master #54dzenanz wants to merge 19 commits intoOpenImaging:masterfrom
dzenanz wants to merge 19 commits intoOpenImaging:masterfrom
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active learning with girder worker Show good_prob row Add active learning persisted state
Add a note indicating that the slash is needed at the end of the mriqc path (we should fix this, but it works this way for now). Also, I added the --no-sub argument when running mriqc so that we avoid submission of the computed metrics back to mriqc.nimh.nih.gov, at least while we are doing a lot of testing of our workflow.
: used in time separation (e.g. 16:10:20) is not allowed in file name on Windows.
This adds a radio group to the retrain dialog, allowing the user to select neural network or random forest classifaction. Also adds a placeholder for neural network learning in the tasks.py module. Also fixes the bug where the retrain dialog "Cancel" button does not work, and adds a note to dev doc on running "data2mriqc.py".
WARNING/MainProcess] m:\dev\zarr\miqa\mriqc\mriqc\data_loader.py:112: SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy self.data['good_prob'][i] = predictions[ind]
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aashish24
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Supersedes and closes #52.