Consolidate SQL scripts to *-0.000-25.000.sql

protein/resources/schemas/dbscripts/postgresql/prot-0.000-21.000.sql → protein/resources/schemas/dbscripts/postgresql/prot-0.000-25.000.sql

@@ -14,11 +14,6 @@
  * limitations under the License.
  */
 
--- @SkipScriptIfSchemaExists This script moved from the MS2 module to the Protein module in 2024. If the schema exists,
--- we want this script to be recorded as "run", but don't want any of the statements executed.
--- Note: This script was not consolidated in Jan, 2025 because we want prot-23.000-23.001.sql to execute on existing servers.
--- TODO: Remove the above annotation in Jan, 2026 during script consolidation
-
 CREATE SCHEMA prot;
 
 /****** AnnotInsertions                                 */
@@ -625,3 +620,17 @@ CREATE TABLE prot.CustomAnnotation
 );
 
 CREATE INDEX IX_CustomAnnotation_CustomAnnotationSetId ON prot.CustomAnnotation(CustomAnnotationSetId);
+
+/* 23.xxx SQL scripts */
+
+-- These PostgreSQL-only special indexes use 'varchar_pattern_ops' operator, which are used when queries have pattern expressions
+-- using LIKE, however, they only work when using prefixes.
+-- PostgreSQL doc :https://www.postgresql.org/docs/current/indexes-opclass.html
+
+CREATE INDEX IF NOT EXISTS IX_ProtSequences_Identifier_VarcharPatternOps ON prot.Identifiers (lower(Identifier) varchar_pattern_ops);
+
+CREATE INDEX IF NOT EXISTS IX_ProtAnnotations_AnnotVal_VarcharPatternOps ON prot.Annotations (lower(AnnotVal) varchar_pattern_ops);
+
+CREATE INDEX IF NOT EXISTS IX_ProtFastaSequences_LookupString_VarcharPatternOps ON prot.FastaSequences (lower(LookupString) varchar_pattern_ops);
+
+CREATE INDEX IF NOT EXISTS IX_ProtIdentifiers_BestName_VarcharPatternOps ON prot.Sequences (lower(BestName) varchar_pattern_ops);

protein/resources/schemas/dbscripts/sqlserver/prot-0.000-21.000.sql → protein/resources/schemas/dbscripts/sqlserver/prot-0.000-25.000.sql

@@ -14,10 +14,6 @@
  * limitations under the License.
  */
 
--- @SkipScriptIfSchemaExists This script moved from the MS2 module to the Protein module in 2024. If the schema exists,
--- we want this script to be recorded as "run", but don't want any of the statements executed.
--- TODO: Remove the above annotation in Jan, 2026 during script consolidation
-
 CREATE SCHEMA prot;
 GO