Merge 25.11 to develop#405

Merged

bbimber merged 24 commits intodevelopfrom

fb_merge_25.11_to_develop

Jan 2, 2026

Commits on Dec 17, 2025

Commits on Dec 19, 2025

Support inclusion/exclusion lists for ApplyKnownClonotypicData
bbimber
committed

Commits on Dec 20, 2025

Commits on Dec 22, 2025

Commits on Dec 23, 2025

Another bugfix to serialization of Map<Long, Long>
bbimber
committed

Commits on Dec 25, 2025

Commits on Dec 26, 2025

More reporting for RunDecoupler
bbimber
committed

Commits on Dec 28, 2025

Commits on Dec 30, 2025

Bugfix to ArchiveReadsetsAction
bbimber
committed

Commits on Dec 31, 2025