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Pull requests: Clinical-Genomics/cg

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Pull requests list

Feat(Scout) Upload chromograph images for Nallo
#4803 opened Dec 30, 2025 by Vince-janv Loading…
1
1
Fix(Mutacc) Provide scout instance
#4800 opened Dec 29, 2025 by Vince-janv Loading…
1
2
Fix(Pacbio) temp fix for pacbio post-processing
#4799 opened Dec 27, 2025 by Vince-janv Loading…
15 tasks
1
Switch from abstract classes to protocols with generic types
#4797 opened Dec 22, 2025 by mogmi • Draft
15 tasks
1
fixes #4776
#4796 opened Dec 22, 2025 by jemten Loading…
15 tasks
1
Endpoint to return all pacbio sequencing runs
#4795 opened Dec 22, 2025 by mogmi Loading…
15 tasks
1
Create analysis in Trailblazer first for raw-data
#4793 opened Dec 19, 2025 by mogmi • Draft
15 tasks
1
Replace Peddy with Somalier in the Scout upload
#4791 opened Dec 18, 2025 by RasmusBurge-CG Loading…
1 of 15 tasks
1
3
remove workflow_bin_path for taxprofiler
#4787 opened Dec 17, 2025 by RasmusBurge-CG Loading…
1 of 15 tasks
1
Remove workflow_bin_path
#4786 opened Dec 16, 2025 by RasmusBurge-CG Loading…
15 tasks
3
update variant catalog path in raredisease bundle
#4781 opened Dec 16, 2025 by ramprasadn Loading…
15 tasks
1
Removal of old deprecated code for pipeline starting Pt 1
#4780 opened Dec 16, 2025 by diitaz93 Loading…
15 tasks
1
Add parent model for nextflow configs
#4773 opened Dec 12, 2025 by kedhammar • Draft
15 tasks
@diitaz93 @kedhammar
2
Better flag handling
#4771 opened Dec 11, 2025 by islean Loading…
15 tasks
3
Add balsamic validation bed version mismatch
#4770 opened Dec 11, 2025 by diitaz93 • Draft
15 tasks
1
1
Update Nallo to 0.9.1
#4751 opened Dec 2, 2025 by fellen31 Loading…
1 of 15 tasks
1
1
possible-refactor
#4711 opened Nov 13, 2025 by RasmusBurge-CG Loading…
15 tasks
1
Test call to config case fails
#4710 opened Nov 13, 2025 by mogmi Loading…
15 tasks
1
Add analysis cascading
#4680 opened Oct 30, 2025 by islean • Draft
15 tasks
4
Use other source when source is other
#4667 opened Oct 23, 2025 by islean • Draft
15 tasks
1
Fix the tests and coverage badge
#4646 opened Oct 7, 2025 by dnil Loading…
5 of 9 tasks
1
Make RNAFUSION samples be always tumour
#4537 opened Aug 1, 2025 by diitaz93 • Draft
2 of 12 tasks
2
23
Filter cancelled Samples for Tomte dna upload
#4498 opened Jul 8, 2025 by ahdamin Loading…
15 tasks
1
chore: create LICENSE file
#4472 opened Jun 26, 2025 by pbiology Loading…
1 of 3 tasks
1
Rnafusion 4: merge only on release
#4385 opened May 7, 2025 by rannick • Draft
15 tasks
3
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