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Most of the PR is the trajectory analyzer, but this also includes the changes to the dependencies that made it possible to run inference outisde of apptainer and on the full 8 GPU node with no issues from vllm coming up.

@BjarniHaukur you should be able to just uv sync and run it. See benchmarks/swe_bench/run_harness_eval.sh for the batchscript.

I created a pyproject from scratch since I was facing some version conflicts, but haven't added training dependencies back to it. Let me know if adding them to the new setup is not enough, we can debug if that's not the case. After that we can make a run to see if the parallelism is also working for training.

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