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Hey Kat,
thanks very much for your beautiful plotting functions!
I am using Gubbins and wanted to change the colour of recombination blocks in the plot - perhaps other users might want to do this as well?
There is a minor change that accomplishes this very easily by adding a fourth colour ("red", "blue") column to the block file and adding the following to the getLayout function in Line 321:
319 x1 <- blocks[i,2]
320 x2 <- blocks[i,3]
321 lines(c(x1,x2),c(y,y), lwd=blwd,lend=2, col=as.character(blocks[i, 4]))Metadata
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