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Hey there,
I want to try your pipeline to process single channel tiff files. Folder structure is as suggested:
image_data (parent folder)
|_ fov-1 (field of view sub-folder)
|_ CD45.tiff (single channel tiff file)
|_ CD20.tiff
...
|_ fov-2
|_ CD45.tiff
|_ CD20.tiff
...
However, when providing the path to the parent folder ('/path/image_data/'), I get the message 'No channel names provided. Using index-based channel selection.' with no response from the widgets. According to your documentation I should be able to change the channels to visualise, select different percentiles and thresholds. In my case, nothing happens except for the display of above mentioned message.
Seems like I am missing something to read the files appropriately, any suggestion what it could be?
I'd appreicate your help!
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