From 7b3ea8be55f4be6645cbbaf804bcabe6ed57dc04 Mon Sep 17 00:00:00 2001 From: Dana Moukheiber Date: Wed, 18 Oct 2023 17:34:02 -0400 Subject: [PATCH 1/2] adds mimic-northwestern derived concept mappings --- README.md | 1 + mimic-northwestern/mimic/vital_signs.csv | 39 +++++++++++++++++++ .../northwestern/vital_signs.csv | 14 +++++++ 3 files changed, 54 insertions(+) create mode 100755 mimic-northwestern/mimic/vital_signs.csv create mode 100644 mimic-northwestern/northwestern/vital_signs.csv diff --git a/README.md b/README.md index acd23e971..302264567 100644 --- a/README.md +++ b/README.md @@ -25,6 +25,7 @@ The repository contains one top-level folder containing community developed code - [mimic-iv-cxr](/mimic-iv-cxr) - code for loading and analyzing both dicom (mimic-iv-cxr/dcm) and text (mimic-iv-cxr/txt) data. In order to clearly indicate that MIMIC-CXR can be linked with MIMIC-IV, we have named this folder mimic-iv-cxr, and any references to MIMIC-CXR / MIMIC-IV-CXR are interchangeable. - [mimic-iv-ed](/mimic-iv-ed) - build scripts for MIMIC-IV-ED. - mimic-iv-waveforms - TBD +- mimic-northwestern(/mimic-northwestern) - derived mapping concepts for MIMIC-Northwestern, a large harmonized multi-center COVID-rich ICU database. The database comprises derived concepts from Beth Israel Deaconess Medical Center (BIDMC) and Northwestern Memorial HealthCare (NMHC) spanning 2020 to 2022. Each subfolder has a README with further detail regarding its content. diff --git a/mimic-northwestern/mimic/vital_signs.csv b/mimic-northwestern/mimic/vital_signs.csv new file mode 100755 index 000000000..178810947 --- /dev/null +++ b/mimic-northwestern/mimic/vital_signs.csv @@ -0,0 +1,39 @@ +itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,count,author_id,reviewer_id +220045,Heart Rate,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,1597325,0000-0001-8822-1884,0000-0002-9348-9284 +220210,Respiratory Rate,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,1563510,0000-0001-8822-1884,0000-0002-9348-9284 +220277,O2 saturation pulseoxymetry,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,1558846,0000-0001-8822-1884,0000-0002-9348-9284 +220179,Non Invasive Blood Pressure systolic,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,853347,0000-0001-8822-1884,0000-0002-9348-9284 +220180,Non Invasive Blood Pressure diastolic,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,853280,0000-0001-8822-1884,0000-0002-9348-9284 +220181,Non Invasive Blood Pressure mean,NBPm,Routine Vital Signs,mmHg,76536-2,Mean blood pressure by Noninvasive,21492241,850894,0000-0001-8822-1884,0000-0002-9348-9284 +220052,Arterial Blood Pressure mean,ABPm,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,586435,0000-0001-8822-1884,0000-0002-9348-9284 +220050,Arterial Blood Pressure systolic,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,585199,0000-0001-8822-1884,0000-0002-9348-9284 +220051,Arterial Blood Pressure diastolic,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,585150,0000-0001-8822-1884,0000-0002-9348-9284 +223761,Temperature Fahrenheit,Temperature F,Routine Vital Signs,°F,8310-5,Body temperature,3020891,356656,0000-0001-8822-1884,0000-0002-9348-9284 +225312,ART BP Mean,ART BP Mean,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,111179,0000-0001-8822-1884,0000-0002-9348-9284 +225309,ART BP Systolic,ART BP Systolic,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,110720,0000-0001-8822-1884,0000-0002-9348-9284 +225310,ART BP Diastolic,ART BP Diastolic,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,110704,0000-0001-8822-1884,0000-0002-9348-9284 +223762,Temperature Celsius,Temperature C,Routine Vital Signs,°C,8310-5,Body temperature,3020891,85893,0000-0001-8822-1884,0000-0002-9348-9284 +228640,EtCO2,EtCO2,Routine Vital Signs,None,19891-1,Carbon dioxide [Partial pressure] in Exhaled gas --at end expiration,3035357,51045,0000-0001-8822-1884,0000-0002-9348-9284 +226329,Blood Temperature CCO (C),Blood Temp CCO (C),Routine Vital Signs,°C,60834-9,Blood temperature,21490586,16724,0000-0001-8822-1884,0000-0002-9348-9284 +226531,Admission Weight (lbs.),Admission Weight (lbs.),General,None,29463-7,Body weight,3025315,14691,0000-0001-8822-1884,0000-0002-9348-9284 +226512,Admission Weight (Kg),Admission Weight (Kg),General,kg,29463-7,Body weight,3025315,12764,0000-0001-8822-1884,0000-0002-9348-9284 +226730,Height (cm),Height (cm),General,cm,8302-2,Body height,3036277,6429,0000-0001-8822-1884,0000-0002-9348-9284 +226707,Height,Height,General,Inch,8302-2,Body height,3036277,6429,0000-0001-8822-1884,0000-0002-9348-9284 +224359,QTc,QTc,Routine Vital Signs,sec,8636-3,Q-T interval corrected,3026258,299,0000-0001-8822-1884,0000-0002-9348-9284 +226094,Orthostatic BPd sitting,Orthostatic BPd sitting,Routine Vital Signs,mmHg,8453-3,Diastolic blood pressure--sitting,3034703,70,0000-0001-8822-1884,0000-0002-9348-9284 +224646,Orthostatic BPs sitting,Orthostatic BPs sitting,Routine Vital Signs,mmHg,8459-0,Systolic blood pressure--sitting,3018586,70,0000-0001-8822-1884,0000-0002-9348-9284 +226096,Orthostatic BPd standing,Orthostatic BPd standing,Routine Vital Signs,mmHg,8454-1,Diastolic blood pressure--standing,3019962,67,0000-0001-8822-1884,0000-0002-9348-9284 +223766,Orthostatic BPs standing,Orthostatic BPs standing,Routine Vital Signs,mmHg,8460-8,Systolic blood pressure--standing,3035856,67,0000-0001-8822-1884,0000-0002-9348-9284 +224645,Orthostatic BPs lying,Orthostatic BPs lying,Routine Vital Signs,mmHg,8461-6,Systolic blood pressure--supine,3009395,66,0000-0001-8822-1884,0000-0002-9348-9284 +226092,Orthostatic BPd lying,Orthostatic BPd lying,Routine Vital Signs,mmHg,8455-8,Diastolic blood pressure--supine,3013940,66,0000-0001-8822-1884,0000-0002-9348-9284 +223765,Orthostatic HR sitting,Orthostatic HR sitting,Routine Vital Signs,bpm,69000-8,Heart rate --sitting,40771525,64,0000-0001-8822-1884,0000-0002-9348-9284 +223764,Orthostatic HR lying,Orthostatic HR lying,Routine Vital Signs,bpm,68999-2,Heart rate --supine,40771524,63,0000-0001-8822-1884,0000-0002-9348-9284 +224647,Orthostatic HR standing,Orthostatic HR standing,Routine Vital Signs,bpm,69001-6,Heart rate --standing,40771526,59,0000-0001-8822-1884,0000-0002-9348-9284 +224643,Manual Blood Pressure Diastolic Left,Manual BPd L,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,56,0000-0001-8822-1884,0000-0002-9348-9284 +224167,Manual Blood Pressure Systolic Left,Manual BPs L,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,56,0000-0001-8822-1884,0000-0002-9348-9284 +227243,Manual Blood Pressure Systolic Right,Manual BPs R,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,41,0000-0001-8822-1884,0000-0002-9348-9284 +227242,Manual Blood Pressure Diastolic Right,Manual BPd R,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,39,0000-0001-8822-1884,0000-0002-9348-9284 +224192,Pulsus Paradoxus,Pulsus Paradoxus,Routine Vital Signs,None,8452-5,Systolic blood pressure.inspiration - expiration,3034464,15,0000-0001-8822-1884,0000-0002-9348-9284 +220059,Pulmonary Artery Pressure systolic,PAPs,Hemodynamics,mmHg,8440-0,Pulmonary artery Systolic blood pressure,3005606,,0000-0001-8822-1884,0000-0002-9348-9284 +220060,Pulmonary Artery Pressure diastolic,PAPd,Hemodynamics,mmHg,8385-7,Pulmonary artery Diastolic blood pressure,3017188,,0000-0001-8822-1884,0000-0002-9348-9284 +220061,Pulmonary Artery Pressure mean,PAPm,Hemodynamics,mmHg,8414-5,Pulmonary artery Mean blood pressure,3028074,,0000-0001-8822-1884,0000-0002-9348-9284 \ No newline at end of file diff --git a/mimic-northwestern/northwestern/vital_signs.csv b/mimic-northwestern/northwestern/vital_signs.csv new file mode 100644 index 000000000..6b062cb3d --- /dev/null +++ b/mimic-northwestern/northwestern/vital_signs.csv @@ -0,0 +1,14 @@ +itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,count,author_id,reviewer_id +320045,PULSE,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,4485960,0000-0001-5561-6396,0000-0001-8822-1884 +320277,PULSE OXIMETRY,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,4316857,0000-0001-5561-6396,0000-0001-8822-1884 +320210,RESPIRATIONS,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,3703165,0000-0001-5561-6396,0000-0001-8822-1884 +320180,BP DIASTOLIC,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,3606066,0000-0001-5561-6396,0000-0001-8822-1884 +320179,BP SYSTOLIC,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,3606066,0000-0001-5561-6396,0000-0001-8822-1884 +323761,TEMPERATURE,Temperature F,Routine Vital Signs,F,8310-5,Body temperature,3020891,2163021,0000-0001-5561-6396,0000-0001-8822-1884 +320051,R ARTERIAL LINE BLOOD PRESSURE,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,715985,0000-0001-5561-6396,0000-0001-8822-1884 +320050,R ARTERIAL LINE BLOOD PRESSURE,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,715985,0000-0001-5561-6396,0000-0001-8822-1884 +326531,WEIGHT/SCALE,Admission Weight,General,Ounce,29463-7,Body weight,3025315,206441,0000-0001-5561-6396,0000-0001-8822-1884 +300001,R BMI,BMI,General,Kg/m^2,39156-5,Body mass index (BMI) [Ratio],3038553,200778,0000-0001-5561-6396,0000-0001-8822-1884 +320051,R ARTERIAL LINE BLOOD PRESSURE 2,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,144183,0000-0001-5561-6396,0000-0001-8822-1884 +320050,R ARTERIAL LINE BLOOD PRESSURE 2,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,144183,0000-0001-5561-6396,0000-0001-8822-1884 +326707,HEIGHT,Height,General,Inch,8302-2,Body height,3036277,78087,0000-0001-5561-6396,0000-0001-8822-1884 From 95914e617559bbe6e1f3016c929745e27bfca74c Mon Sep 17 00:00:00 2001 From: Dana Moukheiber Date: Thu, 19 Oct 2023 15:57:18 -0400 Subject: [PATCH 2/2] minor edit and rename. --- ...{vital_signs.csv => mimic_vital_signs.csv} | 78 +++++++++---------- .../northwestern/nw_vital_signs.csv | 14 ++++ .../northwestern/vital_signs.csv | 14 ---- 3 files changed, 53 insertions(+), 53 deletions(-) rename mimic-northwestern/mimic/{vital_signs.csv => mimic_vital_signs.csv} (55%) mode change 100755 => 100644 create mode 100644 mimic-northwestern/northwestern/nw_vital_signs.csv delete mode 100644 mimic-northwestern/northwestern/vital_signs.csv diff --git a/mimic-northwestern/mimic/vital_signs.csv b/mimic-northwestern/mimic/mimic_vital_signs.csv old mode 100755 new mode 100644 similarity index 55% rename from mimic-northwestern/mimic/vital_signs.csv rename to mimic-northwestern/mimic/mimic_vital_signs.csv index 178810947..73ce9c651 --- a/mimic-northwestern/mimic/vital_signs.csv +++ b/mimic-northwestern/mimic/mimic_vital_signs.csv @@ -1,39 +1,39 @@ -itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,count,author_id,reviewer_id -220045,Heart Rate,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,1597325,0000-0001-8822-1884,0000-0002-9348-9284 -220210,Respiratory Rate,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,1563510,0000-0001-8822-1884,0000-0002-9348-9284 -220277,O2 saturation pulseoxymetry,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,1558846,0000-0001-8822-1884,0000-0002-9348-9284 -220179,Non Invasive Blood Pressure systolic,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,853347,0000-0001-8822-1884,0000-0002-9348-9284 -220180,Non Invasive Blood Pressure diastolic,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,853280,0000-0001-8822-1884,0000-0002-9348-9284 -220181,Non Invasive Blood Pressure mean,NBPm,Routine Vital Signs,mmHg,76536-2,Mean blood pressure by Noninvasive,21492241,850894,0000-0001-8822-1884,0000-0002-9348-9284 -220052,Arterial Blood Pressure mean,ABPm,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,586435,0000-0001-8822-1884,0000-0002-9348-9284 -220050,Arterial Blood Pressure systolic,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,585199,0000-0001-8822-1884,0000-0002-9348-9284 -220051,Arterial Blood Pressure diastolic,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,585150,0000-0001-8822-1884,0000-0002-9348-9284 -223761,Temperature Fahrenheit,Temperature F,Routine Vital Signs,°F,8310-5,Body temperature,3020891,356656,0000-0001-8822-1884,0000-0002-9348-9284 -225312,ART BP Mean,ART BP Mean,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,111179,0000-0001-8822-1884,0000-0002-9348-9284 -225309,ART BP Systolic,ART BP Systolic,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,110720,0000-0001-8822-1884,0000-0002-9348-9284 -225310,ART BP Diastolic,ART BP Diastolic,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,110704,0000-0001-8822-1884,0000-0002-9348-9284 -223762,Temperature Celsius,Temperature C,Routine Vital Signs,°C,8310-5,Body temperature,3020891,85893,0000-0001-8822-1884,0000-0002-9348-9284 -228640,EtCO2,EtCO2,Routine Vital Signs,None,19891-1,Carbon dioxide [Partial pressure] in Exhaled gas --at end expiration,3035357,51045,0000-0001-8822-1884,0000-0002-9348-9284 -226329,Blood Temperature CCO (C),Blood Temp CCO (C),Routine Vital Signs,°C,60834-9,Blood temperature,21490586,16724,0000-0001-8822-1884,0000-0002-9348-9284 -226531,Admission Weight (lbs.),Admission Weight (lbs.),General,None,29463-7,Body weight,3025315,14691,0000-0001-8822-1884,0000-0002-9348-9284 -226512,Admission Weight (Kg),Admission Weight (Kg),General,kg,29463-7,Body weight,3025315,12764,0000-0001-8822-1884,0000-0002-9348-9284 -226730,Height (cm),Height (cm),General,cm,8302-2,Body height,3036277,6429,0000-0001-8822-1884,0000-0002-9348-9284 -226707,Height,Height,General,Inch,8302-2,Body height,3036277,6429,0000-0001-8822-1884,0000-0002-9348-9284 -224359,QTc,QTc,Routine Vital Signs,sec,8636-3,Q-T interval corrected,3026258,299,0000-0001-8822-1884,0000-0002-9348-9284 -226094,Orthostatic BPd sitting,Orthostatic BPd sitting,Routine Vital Signs,mmHg,8453-3,Diastolic blood pressure--sitting,3034703,70,0000-0001-8822-1884,0000-0002-9348-9284 -224646,Orthostatic BPs sitting,Orthostatic BPs sitting,Routine Vital Signs,mmHg,8459-0,Systolic blood pressure--sitting,3018586,70,0000-0001-8822-1884,0000-0002-9348-9284 -226096,Orthostatic BPd standing,Orthostatic BPd standing,Routine Vital Signs,mmHg,8454-1,Diastolic blood pressure--standing,3019962,67,0000-0001-8822-1884,0000-0002-9348-9284 -223766,Orthostatic BPs standing,Orthostatic BPs standing,Routine Vital Signs,mmHg,8460-8,Systolic blood pressure--standing,3035856,67,0000-0001-8822-1884,0000-0002-9348-9284 -224645,Orthostatic BPs lying,Orthostatic BPs lying,Routine Vital Signs,mmHg,8461-6,Systolic blood pressure--supine,3009395,66,0000-0001-8822-1884,0000-0002-9348-9284 -226092,Orthostatic BPd lying,Orthostatic BPd lying,Routine Vital Signs,mmHg,8455-8,Diastolic blood pressure--supine,3013940,66,0000-0001-8822-1884,0000-0002-9348-9284 -223765,Orthostatic HR sitting,Orthostatic HR sitting,Routine Vital Signs,bpm,69000-8,Heart rate --sitting,40771525,64,0000-0001-8822-1884,0000-0002-9348-9284 -223764,Orthostatic HR lying,Orthostatic HR lying,Routine Vital Signs,bpm,68999-2,Heart rate --supine,40771524,63,0000-0001-8822-1884,0000-0002-9348-9284 -224647,Orthostatic HR standing,Orthostatic HR standing,Routine Vital Signs,bpm,69001-6,Heart rate --standing,40771526,59,0000-0001-8822-1884,0000-0002-9348-9284 -224643,Manual Blood Pressure Diastolic Left,Manual BPd L,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,56,0000-0001-8822-1884,0000-0002-9348-9284 -224167,Manual Blood Pressure Systolic Left,Manual BPs L,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,56,0000-0001-8822-1884,0000-0002-9348-9284 -227243,Manual Blood Pressure Systolic Right,Manual BPs R,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,41,0000-0001-8822-1884,0000-0002-9348-9284 -227242,Manual Blood Pressure Diastolic Right,Manual BPd R,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,39,0000-0001-8822-1884,0000-0002-9348-9284 -224192,Pulsus Paradoxus,Pulsus Paradoxus,Routine Vital Signs,None,8452-5,Systolic blood pressure.inspiration - expiration,3034464,15,0000-0001-8822-1884,0000-0002-9348-9284 -220059,Pulmonary Artery Pressure systolic,PAPs,Hemodynamics,mmHg,8440-0,Pulmonary artery Systolic blood pressure,3005606,,0000-0001-8822-1884,0000-0002-9348-9284 -220060,Pulmonary Artery Pressure diastolic,PAPd,Hemodynamics,mmHg,8385-7,Pulmonary artery Diastolic blood pressure,3017188,,0000-0001-8822-1884,0000-0002-9348-9284 -220061,Pulmonary Artery Pressure mean,PAPm,Hemodynamics,mmHg,8414-5,Pulmonary artery Mean blood pressure,3028074,,0000-0001-8822-1884,0000-0002-9348-9284 \ No newline at end of file +itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,author_id,reviewer_id +220045,Heart Rate,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,0000-0001-8822-1884,0000-0002-9348-9284 +220210,Respiratory Rate,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,0000-0001-8822-1884,0000-0002-9348-9284 +220277,O2 saturation pulseoxymetry,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,0000-0001-8822-1884,0000-0002-9348-9284 +220179,Non Invasive Blood Pressure systolic,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,0000-0001-8822-1884,0000-0002-9348-9284 +220180,Non Invasive Blood Pressure diastolic,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,0000-0001-8822-1884,0000-0002-9348-9284 +220181,Non Invasive Blood Pressure mean,NBPm,Routine Vital Signs,mmHg,76536-2,Mean blood pressure by Noninvasive,21492241,0000-0001-8822-1884,0000-0002-9348-9284 +220052,Arterial Blood Pressure mean,ABPm,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,0000-0001-8822-1884,0000-0002-9348-9284 +220050,Arterial Blood Pressure systolic,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-8822-1884,0000-0002-9348-9284 +220051,Arterial Blood Pressure diastolic,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-8822-1884,0000-0002-9348-9284 +223761,Temperature Fahrenheit,Temperature F,Routine Vital Signs,°F,8310-5,Body temperature,3020891,0000-0001-8822-1884,0000-0002-9348-9284 +225312,ART BP Mean,ART BP Mean,Routine Vital Signs,mmHg,8478-0,Mean blood pressure,3027598,0000-0001-8822-1884,0000-0002-9348-9284 +225309,ART BP Systolic,ART BP Systolic,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-8822-1884,0000-0002-9348-9284 +225310,ART BP Diastolic,ART BP Diastolic,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-8822-1884,0000-0002-9348-9284 +223762,Temperature Celsius,Temperature C,Routine Vital Signs,°C,8310-5,Body temperature,3020891,0000-0001-8822-1884,0000-0002-9348-9284 +228640,EtCO2,EtCO2,Routine Vital Signs,None,19891-1,Carbon dioxide [Partial pressure] in Exhaled gas --at end expiration,3035357,0000-0001-8822-1884,0000-0002-9348-9284 +226329,Blood Temperature CCO (C),Blood Temp CCO (C),Routine Vital Signs,°C,60834-9,Blood temperature,21490586,0000-0001-8822-1884,0000-0002-9348-9284 +226531,Admission Weight (lbs.),Admission Weight (lbs.),General,None,29463-7,Body weight,3025315,0000-0001-8822-1884,0000-0002-9348-9284 +226512,Admission Weight (Kg),Admission Weight (Kg),General,kg,29463-7,Body weight,3025315,0000-0001-8822-1884,0000-0002-9348-9284 +226730,Height (cm),Height (cm),General,cm,8302-2,Body height,3036277,0000-0001-8822-1884,0000-0002-9348-9284 +226707,Height,Height,General,Inch,8302-2,Body height,3036277,0000-0001-8822-1884,0000-0002-9348-9284 +224359,QTc,QTc,Routine Vital Signs,sec,8636-3,Q-T interval corrected,3026258,0000-0001-8822-1884,0000-0002-9348-9284 +226094,Orthostatic BPd sitting,Orthostatic BPd sitting,Routine Vital Signs,mmHg,8453-3,Diastolic blood pressure--sitting,3034703,0000-0001-8822-1884,0000-0002-9348-9284 +224646,Orthostatic BPs sitting,Orthostatic BPs sitting,Routine Vital Signs,mmHg,8459-0,Systolic blood pressure--sitting,3018586,0000-0001-8822-1884,0000-0002-9348-9284 +226096,Orthostatic BPd standing,Orthostatic BPd standing,Routine Vital Signs,mmHg,8454-1,Diastolic blood pressure--standing,3019962,0000-0001-8822-1884,0000-0002-9348-9284 +223766,Orthostatic BPs standing,Orthostatic BPs standing,Routine Vital Signs,mmHg,8460-8,Systolic blood pressure--standing,3035856,0000-0001-8822-1884,0000-0002-9348-9284 +224645,Orthostatic BPs lying,Orthostatic BPs lying,Routine Vital Signs,mmHg,8461-6,Systolic blood pressure--supine,3009395,0000-0001-8822-1884,0000-0002-9348-9284 +226092,Orthostatic BPd lying,Orthostatic BPd lying,Routine Vital Signs,mmHg,8455-8,Diastolic blood pressure--supine,3013940,0000-0001-8822-1884,0000-0002-9348-9284 +223765,Orthostatic HR sitting,Orthostatic HR sitting,Routine Vital Signs,bpm,69000-8,Heart rate --sitting,40771525,0000-0001-8822-1884,0000-0002-9348-9284 +223764,Orthostatic HR lying,Orthostatic HR lying,Routine Vital Signs,bpm,68999-2,Heart rate --supine,40771524,0000-0001-8822-1884,0000-0002-9348-9284 +224647,Orthostatic HR standing,Orthostatic HR standing,Routine Vital Signs,bpm,69001-6,Heart rate --standing,40771526,0000-0001-8822-1884,0000-0002-9348-9284 +224643,Manual Blood Pressure Diastolic Left,Manual BPd L,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-8822-1884,0000-0002-9348-9284 +224167,Manual Blood Pressure Systolic Left,Manual BPs L,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-8822-1884,0000-0002-9348-9284 +227243,Manual Blood Pressure Systolic Right,Manual BPs R,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-8822-1884,0000-0002-9348-9284 +227242,Manual Blood Pressure Diastolic Right,Manual BPd R,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-8822-1884,0000-0002-9348-9284 +224192,Pulsus Paradoxus,Pulsus Paradoxus,Routine Vital Signs,None,8452-5,Systolic blood pressure.inspiration - expiration,3034464,0000-0001-8822-1884,0000-0002-9348-9284 +220059,Pulmonary Artery Pressure systolic,PAPs,Hemodynamics,mmHg,8440-0,Pulmonary artery Systolic blood pressure,3005606,0000-0001-8822-1884,0000-0002-9348-9284 +220060,Pulmonary Artery Pressure diastolic,PAPd,Hemodynamics,mmHg,8385-7,Pulmonary artery Diastolic blood pressure,3017188,0000-0001-8822-1884,0000-0002-9348-9284 +220061,Pulmonary Artery Pressure mean,PAPm,Hemodynamics,mmHg,8414-5,Pulmonary artery Mean blood pressure,3028074,0000-0001-8822-1884,0000-0002-9348-9284 diff --git a/mimic-northwestern/northwestern/nw_vital_signs.csv b/mimic-northwestern/northwestern/nw_vital_signs.csv new file mode 100644 index 000000000..a76ce8331 --- /dev/null +++ b/mimic-northwestern/northwestern/nw_vital_signs.csv @@ -0,0 +1,14 @@ +itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,author_id,reviewer_id +320045,PULSE,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,0000-0001-5561-6396,0000-0001-8822-1884 +320277,PULSE OXIMETRY,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,0000-0001-5561-6396,0000-0001-8822-1884 +320210,RESPIRATIONS,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,0000-0001-5561-6396,0000-0001-8822-1884 +320180,BP DIASTOLIC,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,0000-0001-5561-6396,0000-0001-8822-1884 +320179,BP SYSTOLIC,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,0000-0001-5561-6396,0000-0001-8822-1884 +323761,TEMPERATURE,Temperature F,Routine Vital Signs,F,8310-5,Body temperature,3020891,0000-0001-5561-6396,0000-0001-8822-1884 +320051,R ARTERIAL LINE BLOOD PRESSURE,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-5561-6396,0000-0001-8822-1884 +320050,R ARTERIAL LINE BLOOD PRESSURE,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-5561-6396,0000-0001-8822-1884 +326531,WEIGHT/SCALE,Admission Weight,General,Ounce,29463-7,Body weight,3025315,0000-0001-5561-6396,0000-0001-8822-1884 +300001,R BMI,BMI,General,Kg/m^2,39156-5,Body mass index (BMI) [Ratio],3038553,0000-0001-5561-6396,0000-0001-8822-1884 +320051,R ARTERIAL LINE BLOOD PRESSURE 2,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,0000-0001-5561-6396,0000-0001-8822-1884 +320050,R ARTERIAL LINE BLOOD PRESSURE 2,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,0000-0001-5561-6396,0000-0001-8822-1884 +326707,HEIGHT,Height,General,Inch,8302-2,Body height,3036277,0000-0001-5561-6396,0000-0001-8822-1884 diff --git a/mimic-northwestern/northwestern/vital_signs.csv b/mimic-northwestern/northwestern/vital_signs.csv deleted file mode 100644 index 6b062cb3d..000000000 --- a/mimic-northwestern/northwestern/vital_signs.csv +++ /dev/null @@ -1,14 +0,0 @@ -itemid,label,abbreviation,category,unitname,loinc,loinc_label,omop_id,count,author_id,reviewer_id -320045,PULSE,HR,Routine Vital Signs,bpm,8867-4,Heart rate,3027018,4485960,0000-0001-5561-6396,0000-0001-8822-1884 -320277,PULSE OXIMETRY,SpO2,Respiratory,%,59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,40762499,4316857,0000-0001-5561-6396,0000-0001-8822-1884 -320210,RESPIRATIONS,RR,Respiratory,insp/min,9279-1,Respiratory rate,3024171,3703165,0000-0001-5561-6396,0000-0001-8822-1884 -320180,BP DIASTOLIC,NBPd,Routine Vital Signs,mmHg,76535-4,Diastolic blood pressure by Noninvasive,21492240,3606066,0000-0001-5561-6396,0000-0001-8822-1884 -320179,BP SYSTOLIC,NBPs,Routine Vital Signs,mmHg,76534-7,Systolic blood pressure by Noninvasive,21492239,3606066,0000-0001-5561-6396,0000-0001-8822-1884 -323761,TEMPERATURE,Temperature F,Routine Vital Signs,F,8310-5,Body temperature,3020891,2163021,0000-0001-5561-6396,0000-0001-8822-1884 -320051,R ARTERIAL LINE BLOOD PRESSURE,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,715985,0000-0001-5561-6396,0000-0001-8822-1884 -320050,R ARTERIAL LINE BLOOD PRESSURE,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,715985,0000-0001-5561-6396,0000-0001-8822-1884 -326531,WEIGHT/SCALE,Admission Weight,General,Ounce,29463-7,Body weight,3025315,206441,0000-0001-5561-6396,0000-0001-8822-1884 -300001,R BMI,BMI,General,Kg/m^2,39156-5,Body mass index (BMI) [Ratio],3038553,200778,0000-0001-5561-6396,0000-0001-8822-1884 -320051,R ARTERIAL LINE BLOOD PRESSURE 2,ABPd,Routine Vital Signs,mmHg,8462-4,Diastolic blood pressure,3012888,144183,0000-0001-5561-6396,0000-0001-8822-1884 -320050,R ARTERIAL LINE BLOOD PRESSURE 2,ABPs,Routine Vital Signs,mmHg,8480-6,Systolic blood pressure,3004249,144183,0000-0001-5561-6396,0000-0001-8822-1884 -326707,HEIGHT,Height,General,Inch,8302-2,Body height,3036277,78087,0000-0001-5561-6396,0000-0001-8822-1884