Skip to content

Missing examples for how to use the smart_open integration #59

@sarahmcmorgan

Description

@sarahmcmorgan

Hey y'all, I'm running into issues trying to use the smart_open integration. I'm hoping you can help provide some guidance.

I ran the optional python -m pip install -e ".[optimized-streaming]" and confirmed that smart_open was installed. I'm testing with Amazon S3. I'm logged into S3 and can confirm that I see the buckets using aws s3 ls --profile. I don't see any example commands in the docs for how to run csvtofhir convert using an S3 bucket. Here's an example of the commands I've tried.

csvtofhir convert -d s3://{my-test-bucket}/ -o s3://{my-test-bucket}/output/

csvtofhir convert -d https://{my-test-bucket}.s3.us-east-1.amazonaws.com -o https://{my-test-bucket}.s3.us-east-1.amazonaws.com/output/

Any help would be greatly appreciated. This is awesome tool and I'm planning to contribute mappings for a few more resources like Coverage and EOB.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions