Inconsistent no. of proteins

[glmaala]

The number of proteins declared in the output file under Consistency Assessment does not match the number of proteins that is in my input FASTA file. I did not submit an isoform file, so I would expect that the number of proteins in the input would be consistent in the output.

I checked the output FASTA files, and the number of sequences within them seemed consistent with the numbers declared in the summary of results, except for the Total Consistent number and the "Mapped" FASTA sequences. From what I understood with the other files, I presumed that the Total Consistent and the Mapped Sequences are the same thing.

I've only encountered this error with few of my data sets, so I'm unsure where the error is coming from.

I hope you can help me with this.

[YanNevers]

Hello @glmaala ,

Thank you for reporting the issue. I do not think I encountered this before but you are right that the number in "mapped'" FASTA should in principle correspond to the one reported as "Total Consistent".
Could you share example files, or at least ouput of commands that made you notice the difference in number, to help me investigating it?

Thank you,
Yannis