From 214421cbf2e535f5aa6ae184d0bd42f840a03c09 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gildas=20Le=20Corguill=C3=A9?= Date: Thu, 24 Jan 2019 09:52:41 +0100 Subject: [PATCH 1/2] Update conda-dubii-3-stat-R.yml --- conda-dubii-3-stat-R.yml | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/conda-dubii-3-stat-R.yml b/conda-dubii-3-stat-R.yml index 258947c..357fc9d 100644 --- a/conda-dubii-3-stat-R.yml +++ b/conda-dubii-3-stat-R.yml @@ -4,22 +4,22 @@ name: dubii_r_2019 channels: - - r - conda-forge + - bioconda/label/gcc7 # To get R > 3.5 - bioconda + - default - lcantini dependencies: ## RCRAN packages - - r::r-base >=3.5,< 3.6 - - r::r-knitr # For R markdown - - r::r-kableextra # To export nice-looking tables in the R markdown reports - - r::r-formattable # nice formating of tables in reports - - r::r-roxygen2 # To build package documentation - - r::r-yaml # Required to load Yaml config files - - r::r-e1071 # for SVM - - r::r-randomforest # Supervised classification + - conda-forge::r-knitr # For R markdown + - conda-forge::r-kableextra # To export nice-looking tables in the R markdown reports + - conda-forge::r-formattable # nice formating of tables in reports + - conda-forge::r-roxygen2 # To build package documentation + - conda-forge::r-yaml # Required to load Yaml config files + - conda-forge::r-e1071 # for SVM + - conda-forge::r-randomforest # Supervised classification ## Bioconductor packages - bioconda::bioconductor-deseq2 From 9809ba7c08548eca889464cd4ae55deda8e12f9e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gildas=20Le=20Corguill=C3=A9?= Date: Thu, 24 Jan 2019 09:59:24 +0100 Subject: [PATCH 2/2] Update conda-dubii-3-stat-R.yml --- conda-dubii-3-stat-R.yml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/conda-dubii-3-stat-R.yml b/conda-dubii-3-stat-R.yml index 001763e..5938ddd 100644 --- a/conda-dubii-3-stat-R.yml +++ b/conda-dubii-3-stat-R.yml @@ -20,11 +20,11 @@ dependencies: - conda-forge::r-yaml # Required to load Yaml config files - conda-forge::r-e1071 # for SVM - conda-forge::r-randomforest # Supervised classification - - r::r-tidyverse # Collection of R packages designed for data science (ggplot2, tidyr, dplyr, readr, purr, tibble, strigr, forcats) - - r::r-FactoMineR # For PCA - - r::r-factoextra # To plot PCA output - - r::r-cowplot # Add-on to ggplot2 for enhance design - - r::r-corrplot # Graphical display of a correlation matrix, confidence interval + - conda-forge::r-tidyverse # Collection of R packages designed for data science (ggplot2, tidyr, dplyr, readr, purr, tibble, strigr, forcats) + - bioconda::r-factominer # For PCA + - conda-forge::r-factoextra # To plot PCA output + - conda-forge::r-cowplot # Add-on to ggplot2 for enhance design + - conda-forge::r-corrplot # Graphical display of a correlation matrix, confidence interval ## Bioconductor packages - bioconda::bioconductor-deseq2