From 1d2725043178929fd3db1a8d7de0e080252b0d49 Mon Sep 17 00:00:00 2001
From: Sebastian Benjamin <sebastiancbenjamin@gmail.com>
Date: Fri, 4 Apr 2025 14:21:49 -0700
Subject: [PATCH 1/3] MUI Paper overflow fix

---
 jbrowse/src/client/JBrowse/jbrowse.css | 25 +++++++++++++++----------
 1 file changed, 15 insertions(+), 10 deletions(-)

diff --git a/jbrowse/src/client/JBrowse/jbrowse.css b/jbrowse/src/client/JBrowse/jbrowse.css
index 276f91c79..fadb0d4fc 100644
--- a/jbrowse/src/client/JBrowse/jbrowse.css
+++ b/jbrowse/src/client/JBrowse/jbrowse.css
@@ -1,13 +1,18 @@
 /* This corrects a border that placed a small vertical line to the top-left of the search field */
-fieldset.MuiOutlinedInput-notchedOutline > legend {
-    border-style: none;
-}
+ fieldset.MuiOutlinedInput-notchedOutline > legend {
+     border-style: none;
+ }
 
-html {
-    font-size: 16px !important;
-}
+ html {
+     font-size: 16px !important;
+ }
 
-/* Increase font size for tooltips: */
-div[class^="makeStyles-tooltip-"] {
-    font-size: 12px;
-}
\ No newline at end of file
+ /* Increase font size for tooltips: */
+ div[class^="makeStyles-tooltip-"] {
+     font-size: 12px;
+ }
+
+ .MuiDialog-paperScrollPaper {
+   max-height: 100vh;
+   overflow-y: scroll;
+ }
\ No newline at end of file

From 15ff65a66ad2c0b3795e0032548c1edb0501f67e Mon Sep 17 00:00:00 2001
From: Sebastian Benjamin <sebastiancbenjamin@gmail.com>
Date: Fri, 4 Apr 2025 14:33:22 -0700
Subject: [PATCH 2/3] Remove seperate overflow control from
 ExtendedVariantWidget

---
 .../ExtendedVariantWidget/ExtendedVariantWidget.tsx             | 2 +-
 jbrowse/src/client/JBrowse/jbrowse.css                          | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantWidget/ExtendedVariantWidget.tsx b/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantWidget/ExtendedVariantWidget.tsx
index 3c3ddced5..1fe878691 100644
--- a/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantWidget/ExtendedVariantWidget.tsx
+++ b/jbrowse/src/client/JBrowse/Browser/plugins/ExtendedVariantPlugin/ExtendedVariantWidget/ExtendedVariantWidget.tsx
@@ -407,7 +407,7 @@ export default jbrowse => {
         feat["INFO"] = null
 
         return (
-                <Paper data-testid="extended-variant-widget" style={{height: '100vh', overflowY: 'scroll'}}>
+                <Paper data-testid="extended-variant-widget">
                     {message}
                     <FeatureDetails
                             feature={feat}
diff --git a/jbrowse/src/client/JBrowse/jbrowse.css b/jbrowse/src/client/JBrowse/jbrowse.css
index fadb0d4fc..e4d8b1aaa 100644
--- a/jbrowse/src/client/JBrowse/jbrowse.css
+++ b/jbrowse/src/client/JBrowse/jbrowse.css
@@ -13,6 +13,6 @@
  }
 
  .MuiDialog-paperScrollPaper {
-   max-height: 100vh;
+   max-height: 95vh;
    overflow-y: scroll;
  }
\ No newline at end of file

From 6aa8651d888ec162b86f7618d30a56074f5cd9b1 Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@gmail.com>
Date: Fri, 4 Apr 2025 15:21:59 -0700
Subject: [PATCH 3/3] Consistent formatting

---
 jbrowse/src/client/JBrowse/jbrowse.css | 28 +++++++++++++-------------
 1 file changed, 14 insertions(+), 14 deletions(-)

diff --git a/jbrowse/src/client/JBrowse/jbrowse.css b/jbrowse/src/client/JBrowse/jbrowse.css
index e4d8b1aaa..26614061a 100644
--- a/jbrowse/src/client/JBrowse/jbrowse.css
+++ b/jbrowse/src/client/JBrowse/jbrowse.css
@@ -1,18 +1,18 @@
 /* This corrects a border that placed a small vertical line to the top-left of the search field */
- fieldset.MuiOutlinedInput-notchedOutline > legend {
-     border-style: none;
- }
+fieldset.MuiOutlinedInput-notchedOutline > legend {
+  border-style: none;
+}
 
- html {
-     font-size: 16px !important;
- }
+html {
+  font-size: 16px !important;
+}
 
- /* Increase font size for tooltips: */
- div[class^="makeStyles-tooltip-"] {
-     font-size: 12px;
- }
+/* Increase font size for tooltips: */
+div[class^="makeStyles-tooltip-"] {
+  font-size: 12px;
+}
 
- .MuiDialog-paperScrollPaper {
-   max-height: 95vh;
-   overflow-y: scroll;
- }
\ No newline at end of file
+.MuiDialog-paperScrollPaper {
+  max-height: 95vh;
+  overflow-y: scroll;
+}
\ No newline at end of file