diff --git a/jbrowse/src/client/JBrowse/Browser/app.tsx b/jbrowse/src/client/JBrowse/Browser/app.tsx
index 2cfcb689a..8b000d9d1 100644
--- a/jbrowse/src/client/JBrowse/Browser/app.tsx
+++ b/jbrowse/src/client/JBrowse/Browser/app.tsx
@@ -2,7 +2,6 @@ import View from './Browser';
import { createRoot } from 'react-dom/client';
import React from 'react';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
createRoot(document.getElementById('app')).render()
});
diff --git a/jbrowse/src/client/JBrowse/Browser/dev.tsx b/jbrowse/src/client/JBrowse/Browser/dev.tsx
index 18acf9e82..0b64adbe2 100644
--- a/jbrowse/src/client/JBrowse/Browser/dev.tsx
+++ b/jbrowse/src/client/JBrowse/Browser/dev.tsx
@@ -2,7 +2,6 @@ import View from './Browser';
import { createRoot } from 'react-dom/client';
import React from 'react';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
createRoot(document.getElementById('app')).render()
}, true);
diff --git a/jbrowse/src/client/JBrowse/VariantSearch/VariantTable.tsx b/jbrowse/src/client/JBrowse/VariantSearch/VariantSearch.tsx
similarity index 96%
rename from jbrowse/src/client/JBrowse/VariantSearch/VariantTable.tsx
rename to jbrowse/src/client/JBrowse/VariantSearch/VariantSearch.tsx
index 75dd70709..a0332e66f 100644
--- a/jbrowse/src/client/JBrowse/VariantSearch/VariantTable.tsx
+++ b/jbrowse/src/client/JBrowse/VariantSearch/VariantSearch.tsx
@@ -11,12 +11,11 @@ import ExtendedVariantPlugin from '../Browser/plugins/ExtendedVariantPlugin/inde
import VariantTableWidget from './components/VariantTableWidget';
import { fetchSession } from '../utils';
import { ErrorBoundary } from './components/ErrorBoundary';
-import LoadingIndicator from './components/LoadingIndicator';
import deepmerge from '@mui/utils/deepmerge';
const nativePlugins = [ExtendedVariantPlugin, LogSession]
-function VariantTable() {
+function VariantSearch() {
const queryParam = new URLSearchParams(window.location.search);
const sessionId = queryParam.get('session') || queryParam.get('database') || queryParam.get('sessionId')
const locString = queryParam.get('location') || queryParam.get('loc')
@@ -97,4 +96,4 @@ function VariantTable() {
)
}
-export default observer(VariantTable)
+export default observer(VariantSearch)
diff --git a/jbrowse/src/client/JBrowse/VariantSearch/app.tsx b/jbrowse/src/client/JBrowse/VariantSearch/app.tsx
index e477e2194..9565db3a1 100644
--- a/jbrowse/src/client/JBrowse/VariantSearch/app.tsx
+++ b/jbrowse/src/client/JBrowse/VariantSearch/app.tsx
@@ -1,9 +1,8 @@
import React from 'react';
-import VariantTable from './VariantTable';
+import VariantSearch from './VariantSearch';
import { createRoot } from 'react-dom/client';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
- createRoot(document.getElementById('app')).render()
+ createRoot(document.getElementById('app')).render()
});
diff --git a/jbrowse/src/client/JBrowse/VariantSearch/dev.tsx b/jbrowse/src/client/JBrowse/VariantSearch/dev.tsx
index 6d9ee77b1..162a0308a 100644
--- a/jbrowse/src/client/JBrowse/VariantSearch/dev.tsx
+++ b/jbrowse/src/client/JBrowse/VariantSearch/dev.tsx
@@ -1,9 +1,8 @@
import React from 'react';
-import VariantTable from './VariantTable';
+import VariantSearch from './VariantSearch';
import { createRoot } from 'react-dom/client';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
- createRoot(document.getElementById('app')).render()
+ createRoot(document.getElementById('app')).render()
}, true);
diff --git a/jbrowse/src/client/JBrowse/VariantTable/app.tsx b/jbrowse/src/client/JBrowse/VariantTable/app.tsx
index e477e2194..7ffd104e6 100644
--- a/jbrowse/src/client/JBrowse/VariantTable/app.tsx
+++ b/jbrowse/src/client/JBrowse/VariantTable/app.tsx
@@ -3,7 +3,6 @@ import React from 'react';
import VariantTable from './VariantTable';
import { createRoot } from 'react-dom/client';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
createRoot(document.getElementById('app')).render()
});
diff --git a/jbrowse/src/client/JBrowse/VariantTable/dev.tsx b/jbrowse/src/client/JBrowse/VariantTable/dev.tsx
index 6d9ee77b1..3e874750c 100644
--- a/jbrowse/src/client/JBrowse/VariantTable/dev.tsx
+++ b/jbrowse/src/client/JBrowse/VariantTable/dev.tsx
@@ -3,7 +3,6 @@ import React from 'react';
import VariantTable from './VariantTable';
import { createRoot } from 'react-dom/client';
-// Need to wait for container element to be available in labkey wrapper before render
window.addEventListener('DOMContentLoaded', (event) => {
createRoot(document.getElementById('app')).render()
}, true);
diff --git a/singlecell/resources/chunks/RunEscape.R b/singlecell/resources/chunks/RunEscape.R
index 582d0589f..af9c44251 100644
--- a/singlecell/resources/chunks/RunEscape.R
+++ b/singlecell/resources/chunks/RunEscape.R
@@ -2,7 +2,7 @@ for (datasetId in names(seuratObjects)) {
printName(datasetId)
seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])
- seuratObj <- CellMembrane::RunEscape(seuratObj, outputAssayName = outputAssayName, doPlot = TRUE, performDimRedux = performDimRedux)
+ seuratObj <- CellMembrane::RunEscape(seuratObj, outputAssayBaseName = outputAssayBaseName, doPlot = TRUE, performDimRedux = performDimRedux)
saveData(seuratObj, datasetId)
diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunEscape.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunEscape.java
index 84e299ca7..639f4f094 100644
--- a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunEscape.java
+++ b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/RunEscape.java
@@ -21,9 +21,9 @@ public static class Provider extends AbstractPipelineStepProvider